rs36690449 SNP Detail

Summary

• ID
  rs36690449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40987693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGGAA GAAGGGCACA
  ATGTGTGTGG CTTGAGCAGA AGGCTGAGGC TCCTTGAAGC GCAAGCTTCC CTTTTTGGGG
  TCAAACGGGT CCTCTATTTT ATCTGTTCAA CATTCTGTCT CTCTGACTGA CCTACAGGGT
  GGCATCTAAT TAGCTAAGAC AAAGACCCAG GTTCTGTTCA TTGCATCAGT CCAAGATCAT
  R
  TTGGAAAGAA CATTGTAGTA GCCTGGCGTT GCCCTGGACA ACTTTTTAGA CTCTTGCCTT
  CAGCACTCAG ACACTTTGTC AAGAGTCTCT GGTGACATAG TTCTGCCTTG GCCTGCTTTC
  CCTCCAGCGT GAGCATTCAC TGGGTTATAG ATCAACTTGC TACTTCCTGT AGACAGCTTT
  ACCCTCTGTT CTGGCTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50828968	NES13537337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36690449					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828968	NES13537337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40987693 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547535	regulatory region 547535	within coordinates
Rr547536	regulatory region 547536	328 bp proximal
Rr547537	regulatory region 547537	538 bp proximal
Tssr159239	transcription start site region 159239	1236 bp downstream