rs36690504 SNP Detail

Summary

• ID
  rs36690504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40987728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGGCT GAGGCTCCTT
  GAAGCGCAAG CTTCCCTTTT TGGGGTCAAA CGGGTCCTCT ATTTTATCTG TTCAACATTC
  TGTCTCTCTG ACTGACCTAC AGGGTGGCAT CTAATTAGCT AAGACAAAGA CCCAGGTTCT
  GTTCATTGCA TCAGTCCAAG ATCATGTTGG AAAGAACATT GTAGTAGCCT GGCGTTGCCC
  Y
  GGACAACTTT TTAGACTCTT GCCTTCAGCA CTCAGACACT TTGTCAAGAG TCTCTGGTGA
  CATAGTTCTG CCTTGGCCTG CTTTCCCTCC AGCGTGAGCA TTCACTGGGT TATAGATCAA
  CTTGCTACTT CCTGTAGACA GCTTTACCCT CTGTTCTGGC TTCCATCCGC AGGCCCTTCT
  TTAGGACGTA TGCCTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50828966	NES13537338	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36690504					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828966	NES13537338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40987728 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547535	regulatory region 547535	within coordinates
Rr547536	regulatory region 547536	293 bp proximal
Rr547537	regulatory region 547537	503 bp proximal
Tssr159239	transcription start site region 159239	1201 bp downstream