rs36690509 SNP Detail

Summary

• ID
  rs36690509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21575012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGCTAG AGTGTGGAAA
  AGCCCATCAT ATCACCTGGC CACTATTCTG TGGCTCTAGG GTTTTAAACC CAAGGACACA
  GACTTCAATA ATCACGTGAC ACTAACTTAC ACTGTTTACA GGTGAAAACA CTGGCAATAA
  AGTGATAATT CCGGAGGATG GAATTCTGGG AAGGATAACC TTTCGAGGGA GAACTTCACA
  R
  GAGCTTCTGA TACTGTAAGT ATCTCCACTC CAGTATGAAG GTTGGGTTTT CCTTTCTAGA
  CAGTAACTAT ACAGTCTACA CATTTTTCTA AGTGTATATT TCCAAACTAG GAGAAGGTTA
  AAAAAATGGA ATGAAGCATA TAAAAACATT TTTGAAGGAA AATCATTACA CATGATTGTA
  CGTGTGTGTA GTGTGTATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50694210	NES13603156	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	A	G		G	G	G
ss146182914	ENSMUSSNP3845350	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36690509					SNP	A	A	G	G	G	A	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694210	NES13603156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21575012 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	within coordinates
Gm38486	predicted gene, 38486	1446 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	1389 bp proximal
Rr364167	regulatory region 364167	390 bp proximal