rs36691251 SNP Detail

Summary

• ID
  rs36691251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45510734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGCTGT GTGGCTTTCC
  CTGTGTCTCA GGAATACTTC CTGAAAAGAA AAAGTCATTA CTGACGTCCT AGAGTGTCTC
  CTGTCTCCAG ATTAACCCAA CACAGCCTCA CTTCGCCAGT CAGAAGAGAC CTCTGATGGT
  CTCCCTCTGA ACAGTGGTTG AACCAGGACC AAGGTAGCTG CTGATGCTTG CAGCCCCTGC
  R
  ACCAGGCCTT GCAGGAGTCT GTCCTTGCCT TCCTTCCATC CTCTCCTGGC TCTGGCAGGA
  GGCAGCTGAG AAGAGCCAAC TTTGTCTCTG ACCCCCTGGG GCCGGTTATA TTTGGATGTT
  AAAGGTAATG ACACATCCCC ACCAAGCCCT CCCTCTTGCC CGCCTGCTTC AGTAAAGTCT
  CCTGGCAGGG AGGGGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52012089	NES15026929	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	A	G	G	A	G
ss136415371	ENSMUSSNP380180	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36691251					SNP	A	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52012089	NES15026929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45510734 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1867 bp proximal
Rr200397	regulatory region 200397	1934 bp distal
Rr200398	regulatory region 200398	within coordinates
Rr200399	regulatory region 200399	1267 bp proximal
Rr203915	regulatory region 203915	1018 bp distal
Tssr84806	transcription start site region 84806	1822 bp downstream