rs36691265 SNP Detail

Summary

• ID
  rs36691265
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15894501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTTTCT TGTCCATTTG
  TGCATCAGAC CCATTACCCA CGGCCCTTCT CACCCCTTGC TCATCAGCAT CACTTGATGT
  CCCTTCTCTG TGGTTTCTGT AAAAAACTGC CATAAAACTT TGAAATTCTG CCTGAACAGT
  CCTCCCGTGG GAAGTTGGGG TGCAGGAGGA AAGGGATGGT AGCAGCTCCG ACATCTAGAC
  S
  ACAGGAAACA GACCCGGCAG CCTTTGCATT AGAGTTGGCC AGACAGCAGG ACACCAGCAT
  ACGCTAACCA CATTCAATGT TACCAGAGCC TCCACCAGCC ACAACCATAA CTAAAAGCCA
  TAGGCTTCTG GTACCACGCC TTACCCATTA GCCAAGAGCA TCTACTAGTT TCACCCCTGC
  CCATTAGCCA TTGGTTTCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51880845	NES14893769	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36691265					SNP	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880845	NES14893769	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15894501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	1266 bp distal
Rr155078	regulatory region 155078	700 bp proximal
Rr160786	regulatory region 160786	1500 bp proximal
Rr164335	regulatory region 164335	81 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	382 bp downstream
Tssr64588	transcription start site region 64588	366 bp downstream