rs36691600 SNP Detail

Summary

• ID
  rs36691600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38533940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACCTTTA TTGTAACTTG TGTTTCTTGA CTTGTCATTG
  ACACATATTC TCTTAATTTT GTTCTCATCT TAATGAATTA CACTTATATC TTGGTCAGTT
  R
  TAAGCCATCC ATTTATTATA CTTGGCTCAT TTCATTTTAA GTAAAAGAGG TATAGCCTTA
  AATGCATGAG AATACATTTT ATAAAAATAC ATTAAAATGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51287217	NES13770139	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36691600					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51287217	NES13770139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38533940 () rs orientation: forward

Symbol	Name	Function Class
Luc7l2	LUC7-like 2 (S. cerevisiae)	within coordinates
Rr628841	regulatory region 628841	1925 bp proximal
Tssr55661	transcription start site region 55661	42 bp upstream
Tssr55662	transcription start site region 55662	1943 bp upstream