rs36693406 SNP Detail

Summary

• ID
  rs36693406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121069424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTTTTCT CGAACGAGTC
  CTAAGGCGTG CCACTTGTTC CTGAACAGTG TGTGTGCATT ACAACAATCC AGTTTGACAC
  TCCCTGAGTT CTGTATCTTA TTGGTCGGTA TTTGTGATTT GTAGCTCAAA GCTTTGTGCA
  TCACAGGTTA TGCACACAGC GTCCACGAGA GGGCGATATA GCCTCGCTTT TAAGTCCTAC
  R
  CCGTCAGCGC AAGCGCGGCA AGAGTTCGCG AGCTAGGGGA AATCATTACC AACTTCCTTT
  CCACGGTGAA GTCAGTGACC CTTCTGTCAC TTGGCAAAGC AAGCCAGGCA GCGAGCCTCG
  AAAGGCCGTC CTTTAAGTTA ATGATTTATT GATTTTGCTG CCTGGTTTTG CTTTCACTGA
  GCCGGAGAGA AGGGGGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51569575	NES14614184	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36693406					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569575	NES14614184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121069424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	within coordinates
Rr287003	regulatory region 287003	24 bp distal
Rr390218	regulatory region 390218	50 bp upstream
Rr404289	regulatory region 404289	within coordinates