rs36694238 SNP Detail

Summary

• ID
  rs36694238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87822407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAAATC TAAATAGCTA
  GTTGTTAATT TCTAAAACAT AAACTAACAA CATTTACCCT AGGTTTATGA CTCTTTCCTT
  TAAGCTAAAG ATTTTATTTA ATTTGTCATG GTTTATCACT TTTGAATCTG AATGACACTC
  CTTCTAAATG ATGGCATATT AAGTTGTCAA ACAACCTCCA ATTGAAGCTG TGCTTTCAAT
  Y
  ACTCTGATGT ATTCACCTAT GTCTTGTGAT GAAATAAATA TTAAATTACT GATAATGTGT
  GAACATTAAC ACATGGTCAT CTCTAATTAA ATTTTAATTA ATACTAGAAA CATTTTAACT
  TGGTTCACGA AGAACTTGAA ACTCTTTGTA TAACCTAATT TTTAAAGTAA GAAAAGCAAA
  TAGCATTTTC CATTTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51175044	NES13826342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36694238					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51175044	NES13826342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87822407 () rs orientation: forward

Symbol	Name	Function Class
Csn1s1	casein alpha s1	within coordinates
Tssr46870	transcription start site region 46870	1286 bp downstream
Tssr46871	transcription start site region 46871	483 bp downstream
Tssr46872	transcription start site region 46872	328 bp downstream
Tssr46873	transcription start site region 46873	453 bp upstream
Tssr51606	transcription start site region 51606	453 bp upstream
Tssr51607	transcription start site region 51607	292 bp upstream
Tssr51608	transcription start site region 51608	487 bp downstream