rs36694299 SNP Detail

Summary

• ID
  rs36694299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24868536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAATTCA TTTTACTGGT
  TGCAGTTCTC TATCCAGGAA AGCTGAGGCA AGAACTCAAG GGAGGAACCT GAAATGGAAA
  ACACTGAGGA CCACTGCTTA CTGGCTTGTT CAAAGACGTA TGCTCCCCTT TCTGTCCTTC
  CTACTTATCA ATGCATGGTT GAATAATCAA TAAAATTGTT GAAGTTCTGA ACTTTGTTGT
  Y
  ATTTGTCTGT TTTGCGTTTA TATTTACTAT GTTATATACT AGACAAAAGG AGCAGAGTTA
  CTTCTTGCTC TTTGACCAGA GCCTGAGTCC TTACTACAAA AAAGTCTGTT CTCCTGAGCT
  GCCCTCTGCT GAACCCTTGG TTAATCTTCA GATTTTCCTA TGTGTTCTTC TACTTAGAGC
  AGCAGTCCTC AGCCTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50652915	NES14021575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36694299					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50652915	NES14021575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24868536 () rs orientation: forward

Symbol	Name	Function Class
Gm18377	predicted gene, 18377	340 bp downstream
Gm68954	predicted gene, 68954	10 bp downstream
Rr675442	regulatory region 675442	586 bp distal
Rr675443	regulatory region 675443	259 bp distal