rs3669434 SNP Detail

Summary

• ID
  rs3669434
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69661640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTG TTCTAACAGA AGTGTGCTTG
  W
  AGGTTCGCTA ACATTTTCTA TTCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5045396	WI_WGS_13_66582301	WI	MOUSE	f	SNP		T	A
ss39089394	mCV25146581	ABI	CRAMUS_MOUSE	f	SNP	T		A	T
ss144563378	ENSMUSSNP5289686	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss324404658	CHEV_13_69652399	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3669434					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69661640 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	479 bp upstream
Rr277031	regulatory region 277031	1361 bp proximal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates