rs36694620 SNP Detail

Summary

• ID
  rs36694620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47775830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGAAAA TCATGACGCA
  CAGATATGGA ATGAGACATA AAGATGTAAA CATTTGATTG ATAGGACTGA GGCTATTTGG
  TGATTTAAAA AAAAAATGTG TAAAACAATT TGCCTCAACC AGGGATACTT CATGCTGGTA
  GTAAACTATA TATCACAGTC TTTCATTTCA AATTAGCTTC AAGATTAACA TTAAAATAAA
  Y
  AGGACAATAC CAAGATATTC TTCTCTCTCT CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTT TCTCTCGGTA AAGGTGTTAC TAGCCTCAAA CTTGCAACAA
  TTCTCCTTCA TCAGCCTCTC AAGTGCTGAG ATCACAGGTG TGGTCCTTAC ACACACACAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50857474	NES13520315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36694620					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857474	NES13520315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47775830 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	276 bp distal
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	1150 bp proximal
Rr358623	regulatory region 358623	1371 bp proximal
Tssr159755	transcription start site region 159755	262 bp upstream