rs36694720 SNP Detail

Summary

• ID
  rs36694720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92133792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG GTGAGATTCT AGCTTCAAGG
  R
  CCTCAAGTTG AGCAACACCC TCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52034765	NES15054957	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		A
ss323071640	CHEV_9_92146577	CHEVERUD	SCREENING_POP	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36694720					SNP	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52034765	NES15054957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92133792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	983 bp distal
Gm67683	predicted gene, 67683	1222 bp upstream
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	368 bp downstream
Rr401603	regulatory region 401603	1156 bp upstream
Tssr86497	transcription start site region 86497	1986 bp downstream
Tssr86498	transcription start site region 86498	1705 bp downstream
Tssr86499	transcription start site region 86499	1679 bp downstream
Tssr86500	transcription start site region 86500	1671 bp downstream
Tssr86501	transcription start site region 86501	1641 bp downstream
Tssr86502	transcription start site region 86502	1612 bp downstream
Tssr86503	transcription start site region 86503	1552 bp downstream
Tssr86504	transcription start site region 86504	1465 bp downstream
Tssr86505	transcription start site region 86505	1428 bp downstream
Tssr90887	transcription start site region 90887	1253 bp upstream
Tssr90888	transcription start site region 90888	1211 bp upstream