rs3669541 SNP Detail

Summary

• ID
  rs3669541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48193599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA CAGTTACAGT CTCTGCTTCA
  Y
  CCGTCAGCAT GCCAGTACCC TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss5045504	WI_WGS_9_48559095	WI	MOUSE	f	SNP					T	C
ss61394837	NES16768712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		T	C	C		T	T	T
ss136450993	ENSMUSSNP6846712	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss322952928	CHEV_9_48090382	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3669541					SNP	T	T	T	C	T	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394837	NES16768712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48193599 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	within coordinates
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	51 bp proximal
Rr203997	regulatory region 203997	1758 bp proximal