rs36696409 SNP Detail

Summary

• ID
  rs36696409
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGCCCTT CTCGAGAGTT CATCCTTTGA CATACATGGA
  CAGCAGGTTG TGTGAGAGTA GTTTTATTCA TAAGCATGCC GCCAGCATTC ATTCAATGAC
  K
  TTAGAAAAAA AGAGAGAAAT AAAATAAAAT AAAAAGGAGA AACGGGAAGT AAACTAGTGT
  TTGTCATGCT CCAAATTCAC TTCATGCTAG GTATACATGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516752	NES14634626	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36696409					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516752	NES14634626	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679025 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	245 bp distal
Gm45935	predicted gene, 45935	696 bp upstream
Rr404137	regulatory region 404137	518 bp downstream
Rr493049	regulatory region 493049	712 bp distal
Rr493050	regulatory region 493050	585 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	696 bp upstream
Tssr125903	transcription start site region 125903	994 bp downstream
Tssr125904	transcription start site region 125904	580 bp downstream
Tssr129008	transcription start site region 129008	689 bp upstream
Tssr129009	transcription start site region 129009	479 bp upstream
Tssr129010	transcription start site region 129010	468 bp upstream
Tssr129011	transcription start site region 129011	269 bp upstream
Tssr129012	transcription start site region 129012	266 bp upstream
Tssr129013	transcription start site region 129013	259 bp upstream