rs3669675 SNP Detail

Summary

• ID
  rs3669675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37928906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAAATGTC TAGAGTCCAG TTTCTGAGGC TGGAGTCAGC
  TCTGTAGTGT GTCAGTCACC TGGCTTTGTA GGAGCAGTCT TGGAGTGATG TCCCAACTGT
  Y
  GGCTCCTTCC CTGATTATTC TTGCTGTAAG GTAAATGGTG AAGGACCTCA GAGTCGAGGG
  CTCAAACCCT TAGAGTCATA GTTGGACCGT TTAACAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5045638	WI_WGS_3_37760001	WI	MOUSE	f	SNP	T							C
ss45390205	mCV24775231	ABI	CRAMUS_MOUSE	f	SNP		T	C							T
ss46916090	NES10815610	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C		C	C		C	C	C		C
ss134816593	ENSMUSSNP2066416	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss320713684	CHEV_3_37773679	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3669675					SNP	T	T	C	C	C	T	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916090	NES10815610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37928906 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	within coordinates
Rr575580	regulatory region 575580	1165 bp proximal
Rr575581	regulatory region 575581	1573 bp proximal