rs36698143 SNP Detail

Summary

• ID
  rs36698143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42264449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAATGC ATGTGCGCGT
  GTGTGCAAAC ACACACAGAT AAACACACTT TCACAAAAGA CAGAAGAAAG GCATTGGGGA
  CAAGCAGAGG AAACAAAGTG AATGATTTAT CAACAATCAA TGACCAGTAT CAATAAACAC
  AGAATTGGGA TCCAGTTTTT AAGGGCTTGG AGGTAGAATT CTGGTGCAGC ATTGGCCTAG
  Y
  TTGAGATCTG TGTGTTTTGT TTGTTTGCTG GGAGGTGTAA TTGTTAAAAA GGGCCAACAA
  AATGATTCAG TAAGTAAAAC TGTTTGCCTC TAAGCCTAAC AACTTAAGTT TGATCTCTGG
  GCCCCATGTG ATGGAAGGGA AAAAAATCTA CTGCAGACTG TTCTCTGACC TAGACACACA
  CACACACACA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51633918	NES14838055	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36698143					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633918	NES14838055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42264449 () rs orientation: forward

Symbol	Name	Function Class
Clcn1	chloride channel, voltage-sensitive 1	within coordinates
Rr629312	regulatory region 629312	71 bp proximal
Tssr56008	transcription start site region 56008	844 bp downstream
Tssr56009	transcription start site region 56009	828 bp downstream
Tssr56010	transcription start site region 56010	797 bp downstream