rs36700020 SNP Detail

Summary

• ID
  rs36700020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129204137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTCTTT CTGAGCATGA
  CCTCATTGAT CTCCTTGTTG TAGTTATTTA TTCTCATTAG ATTATGTATG TACTGTATTT
  TATAAAGACC AAGTTAATGG TAGGGTCCTG ATTTTCTCAT CTTGGTTCTT CAGCTTTCGA
  AGAAATGTCC ATTAGCCAAA TGATTCTGCT TCTTCCATTG CATACTTCAT GCCAGAAGAG
  R
  AACATACACT TATTTCAACA ACCAAGGAGC CTGCAACACT AGGTACTTGC ATTAGGCAGG
  TCCTCTGGAG AAACAGAACT GATAGAATAT ATATTGTAAA GGGGATCATG ATCTAACTTC
  AACTCTCAGC TTGGCATGGC CTAGAATCAC CTGTGAAGGA AGTCTGAATA AGGGATTTAT
  TACATTGGCT GACTCAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418757	NES13704083	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36700020					SNP	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418757	NES13704083	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129204137 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	within coordinates
Gm47861	predicted gene, 47861	within coordinates
Tssr63548	transcription start site region 63548	1727 bp upstream
Tssr63549	transcription start site region 63549	1913 bp downstream