rs36702396 SNP Detail

Summary

• ID
  rs36702396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27776422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAGTCT TACTATGTAT
  CTCTGGCTGT CCTGGAACTC ACTGTGCAGG CTCAGTGGCC TGCCCCTTGC ATAGATCCAC
  CTCTCGGCTT CCCGACTGCT GGGTTTGAAA GTGTGTGCAC CACACCTGGG AAGCACTAGT
  TTCAACCCAC AGAAGCACAC ACATCCCCTC TAAAAATCAA ATTCCCACAC CATTGGTGTG
  Y
  GCTTCCACTA CAACCGCATT AAGATGGAGA TTTTCTTTTT TTTTTATTTA CTTTTTTATT
  ATTGGGTATT TATTTCATTT ACATTTCCAA CGCTATCCCA AAAGTCCCCC ACACCCTCCC
  ACACCCACTC CCCCACCCAC CCACTCCCAC CTCTTGGCCC TGGCGTTCCC CTGTACTGAG
  ACATATAAAG TCTGCACGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51887649	NES14908303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36702396					SNP	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887649	NES14908303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27776422 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	Intron
Tssr65346	transcription start site region 65346	1809 bp downstream
Tssr65347	transcription start site region 65347	1782 bp downstream
Tssr65348	transcription start site region 65348	1755 bp downstream
Tssr65349	transcription start site region 65349	1695 bp downstream
Tssr65350	transcription start site region 65350	1669 bp downstream
Tssr65351	transcription start site region 65351	1647 bp downstream