rs36702590 SNP Detail

Summary

• ID
  rs36702590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45311935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGGGA AGAGATGCTG
  CTTGGTATTT CTGCTAGGGA AGAATGGACG CTTGCGGCCA GTCGTGGTGA TGTCTGGCGG
  GGATCCAGCT GAGGCACTGG GACAAGAGAC AACTGTCAGG GACCCTCCAG TAGAAGTCAA
  GGGGGCTCCC AGCTATATAA AGGGATGTGG TGAGAAAATT TATCTCCTGG GGACCCAGCC
  M
  AGCTTAAAGT AGAGGGTGCA TCTACCATTG TTAGAACCTT CTTTGGGCAA GCACTTCTTC
  TAATGACCTC CTCCCGCCTC AAGGCTCTGA GGTAGGTGTT CACCATGCAC TTTAGATGGC
  AGGATACAGA GATGCATCCT TCTCAGGGCT CACTGGGTCA GAAAAGCAAG GTCAGTTGAC
  AGACGGATTT ATACTGATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013386	NES15030441	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36702590					SNP	A	A	A	A	A	C	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013386	NES15030441	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45311935 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1266 bp proximal
Rr200381	regulatory region 200381	1066 bp proximal
Rr203905	regulatory region 203905	1895 bp distal
Tssr84781	transcription start site region 84781	968 bp downstream
Tssr84782	transcription start site region 84782	919 bp downstream
Tssr84783	transcription start site region 84783	1928 bp upstream
Tssr84784	transcription start site region 84784	1978 bp upstream