rs36704086 SNP Detail

Summary

• ID
  rs36704086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5818561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTCTC TCTCCTGTAA
  TGAGAGCTCA CAAAGGTGGG GACCTGTTTG TTTGCTCTGT GCTGGGTCCT CGAGGGCAGA
  TCTGACTCTC CTTCCTCCCC AGCACTCTGT GTGGCACCCA TGAGGAACAG AGCAGCAATG
  CAAGTATGAA GTGACTGGTA GGTCATTGCT GAGTGACAGG GGAGTCATCA AACACCTGCC
  R
  TGTGCTCACC TGTATACAGC AGCCCGCACT ACCCGCCCCC ACAACGTGTG GATTCAACAA
  CCAGACAGCA AAATTATCAG GAAAGAAAGC ATTGCCGGTA CTACATATGT ACAGCCTGCC
  TTTTCCTGCC ATAGTTTGCC CAAATATCAT GATATAGTAA CTATTTACAC AGGACGTGTA
  CTACCTAAGG TGCTAGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577560	NES13649428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36704086					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577560	NES13649428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5818561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	1969 bp proximal
Rr363624	regulatory region 363624	1239 bp proximal
Scyl1	SCY1-like 1 (S. cerevisiae)	within coordinates