rs36704118 SNP Detail

Summary

• ID
  rs36704118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87754130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCCTTG TTACACATAT
  AGGCAAGTGC ACCTGCGGTA TAACACATAC GTTGAACAAG CACAGACACA TATACGTATA
  TACACAAAAG TCCTTCCAGA GGTCTGACCC ACATCCTTCC TGTTGCAGCT CTGCCCCACT
  CACCTCATGT ATCTTCTCAA TGCAAACTTC TGAGTATGAA TCTCTGAGAA GCCTTATAAC
  R
  CTTTTGGAGA AGGGGACAAA GGTCAGATAG CAAGAACACC TCACACCTAA CAGAGTAGCC
  CACCACTACC CCAAGTGCCT GGCTTCCAGA GACAGGACTG GTGTGTTACT GCACTTTCCA
  TGACGTGGGT CCTTTTCGAG ACAAAGGAGG TGGGTAAAGC GACATTTCCT GTCCCTGGGG
  GAAGGAGGGA GAGGAGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575825	NES14668861	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36704118					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575825	NES14668861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87754130 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	50 bp upstream
Rr579559	regulatory region 579559	within coordinates
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29832	transcription start site region 29832	1524 bp downstream
Tssr29833	transcription start site region 29833	51 bp downstream
Tssr29834	transcription start site region 29834	35 bp downstream
Tssr29835	transcription start site region 29835	17 bp upstream
Tssr29836	transcription start site region 29836	58 bp upstream
Tssr29837	transcription start site region 29837	165 bp upstream
Tssr29838	transcription start site region 29838	181 bp upstream
Tssr29839	transcription start site region 29839	313 bp upstream
Tssr33958	transcription start site region 33958	222 bp upstream
Tssr33959	transcription start site region 33959	22 bp upstream
Tssr33960	transcription start site region 33960	61 bp downstream