rs36704399 SNP Detail

Summary

• ID
  rs36704399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6212959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGTAG CCTAGGTCAA
  CCCATTTCAG CCCCTGCCCC CAGGGCTCTC AGAAGCAAGG TGATAGGGTC CTGCTGGCAC
  GTCCAATCTC ATCGACCCAA CAGTTTCAAT TATGAATATG TCAGCGATCC TAGAATCCAG
  ATCCACTGCA AGTCTCAAAG AGAAGATGCA CCAGGCTGGG CAGTGCTTTC TAATAGGGAA
  R
  GGCTCTCTTC ATCCTGTTCC TCCCCTTCAA ACAGCTCTGT GGACTAGGAA TGACTTTATC
  ATCCACAGCA AAGGGATCAC ACACAGAAGG TATGGATGAT AAATTTGGTG GGCAGAGCAC
  CAGGGCTCAT CTCTTAAGGC TCAAGCTGGC TTCAGGACCA GTTCTAGAGA TGGCAAAAGA
  TTCCTGTGTT GCATAACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575254	NES13648810	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36704399					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575254	NES13648810	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6212959 () rs orientation: forward

Symbol	Name	Function Class
Batf2	basic leucine zipper transcription factor, ATF-like 2	1465 bp upstream
Rr363687	regulatory region 363687	1241 bp proximal
Tssr154583	transcription start site region 154583	1504 bp upstream
Tssr154584	transcription start site region 154584	1521 bp upstream
Tssr154585	transcription start site region 154585	1549 bp upstream