rs3670449 SNP Detail

Summary

• ID
  rs3670449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37929097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACAGGAA GCTGACTGGA GAAGACAAGA GCTTCCCCAA
  GCCCTCTGAG CACCTGGCTA TGCTCCTGAA GAGGACTTCC AAACAAGAGT GTGCCTTAGG
  Y
  GGCTTCCCAG CTTCCAGCTG GATCCTGGAA AAGGCTCTTC CTCAATTTCC TGTTCTTCAG
  CATCATGGAA AGTGGTTTAT TGCTCACCCC AACCCTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5046414	WI_WGS_3_37760192	WI	MOUSE	f	SNP	T					C
ss46916099	NES10815615	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C			C	C		C	C	C		C
ss134816602	ENSMUSSNP261642	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320713687	CHEV_3_37773870	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3670449					SNP	T	C	C	T	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916099	NES10815615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37929097 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	within coordinates
Rr575580	regulatory region 575580	974 bp proximal
Rr575581	regulatory region 575581	1382 bp proximal