rs36704914 SNP Detail

Summary

• ID
  rs36704914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59036740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCACTTTCT CGTCGTTTGT TAGGCTCTGG
  AGCAGTGTAT GGTCGTGCAC AGTGTTTTGC CTGATTATGG GAATCTTCTG GACTCTTGCC
  TAAAAGTCTT GCTCCTGATT TTGATTTTTT AGGACATTTA ACTGTGGGTG CGTGTAAATC
  R
  TCGAATCTAT CCAAACAATC CTAAATATTG AAACAAAATA TCAAATTGGT AAATTAGGCT
  TCTTAAAAAC ACATTGTTTT GTTATAAGAA CTCTTTGTAA TAGCAACAGT TAAGAAATGA
  ATGCCCTGAT GTCTTATAGG CAGTCCCAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51261638	NES14277549	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	G	G	G	G		G	A	G	G		A
ss319738138	CHEV_1_59054425	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36704914					SNP	A	G	G	A	A	G	G	G	G	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261638	NES14277549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59036740 () rs orientation: forward

Symbol	Name	Function Class
C2cd6	C2 calcium dependent domain containing 6	Coding-Synonymous
Gm55816	predicted gene, 55816	within coordinates