rs36705625 SNP Detail

Summary

• ID
  rs36705625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31884799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGAATG GTAGGTTGAG
  AGCAGACTGT CTCCTCAGAA GCTGTTTTAT CAAAAAAGGC AGATTAGCAA GAGGAGGCAA
  AGCTGCAGAA ATATAATAAT GCATTAACTT TTAAGGTGTT GCTATAAAAT ATGATATTCA
  GAAATATGAT GTGTTTCTGG CTTAGCTTAT TTTTTCAGTC CACGTGCACG CACTAGGAAC
  R
  AACTAGAAAT AGCACAGAAC CAGTGAGAAG AAGATAGAAT TCTGATTTTG TGCTTTTTGC
  TTTTTGCTAG TCGAGGCATC TGTATAGTCA ATGCTTTTGC CATTGTGGCA CCTGAGAGAA
  GCAACGGAAA GCAGGACAGA CTTGGTTTTG GCTTATGGCT TTCCAGGTTT CTTTCCAGTT
  TGGTTGTTGT TTGCTGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50964975	NES14421270	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36705625					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50964975	NES14421270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31884799 () rs orientation: forward

Symbol	Name	Function Class
Cog5	component of oligomeric golgi complex 5	within coordinates
Rr387038	regulatory region 387038	801 bp upstream