rs3670579 SNP Detail

Summary

• ID
  rs3670579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66814048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGGCCC CCGCTCTACC
  ATGCACATAT TTGGTTGCTT CCTAAGGCAC TAGGTTGGTG GCCAAGAAAC AATTCAAAAT
  CCCAAGTTCT CTGACCTCCC AAGCCAACAG GCAACATGCA CATCCACATT AGCTGCCACC
  AGGGCCTGTT AAAGGGGGCT TGCTCATGTT CCCAGTCAGC ACTCTTCTTA AGGGCTTGTG
  S
  ATTCATTTAC ACATTTATTC CAGACCACTG AAAAGGACTG TTTCTAGGCC TAAATGCTCA
  ATACACTGAA ATTCATAGAG AATTCCAGCA GTCACTCTGA AAGATTCAAG TCGCTATGGA
  CAAAGGGCCA AGAACTCAAG TGTGAGCCTC AGGTTTAGGC TCCATTATCT ATTTACAGGA
  CCGACAGAGT CCATTCTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss5046545	WI_WGS_9_67500176	WI	MOUSE	f	SNP	C			G
ss46386955	mCV24680227	ABI	CRAMUS_MOUSE	f	SNP		C	G	G		G
ss61411537	NES16801150	PERLEGEN	MM_PANEL2	f	SNP					C	G	G	G		G	G	G	G
ss136576015	ENSMUSSNP1746446	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G			G
ss322989014	CHEV_9_66754573	CHEVERUD	SCREENING_POP	f	SNP									G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3670579					SNP	C	C	G	G	C	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411537	NES16801150	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66814048 () rs orientation: forward

Symbol	Name	Function Class
Rab8b	RAB8B, member RAS oncogene family	within coordinates
Rr196777	regulatory region 196777	648 bp distal