rs36706564 SNP Detail

Summary

• ID
  rs36706564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:71058701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAATGA GTCAGCAGTT
  GAGAGTAAAT GTAGGTAAGT CTGCACTGAT AATAGTATCA ACAAAATAAA AGGAGAGAGG
  GCTTGATGGG AGGTGTCTGT GGGAGGAGGT GGGAAACTGG AATGCGTGGG ATCGGTTCCG
  TGTACGGAAT CATCAAAGGA GAAGTAGAAG TTCTATCTTT TTAAATTCAC TAAAAAATGA
  Y
  AGTGATGGGG AATTGAGATA TGAAAGGAGA TTAATGGAAG GGAACAGATG GCCAGAGTTA
  GGACTGTAAG GAGCTTCTTC AAACACAAGG CAAAGTACCC ACAGCACACA AAGGGCCCAC
  GGAGTGGGGC AGATGTGGGG CGAGGAAAGC TGTGGAGGCA GCCAGAAGAC AGAATGATCA
  GAGCAGACAC TGCTGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50734964	NES14244216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36706564					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50734964	NES14244216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71058701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aqp9	aquaporin 9			Intron
				Noncoding-Transcript-Variant
Gm32714	predicted gene, 32714			within coordinates
Rr682494	regulatory region 682494			938 bp distal