rs36707019 SNP Detail

Summary

• ID
  rs36707019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTGTG AAGTCCTGGC
  TGTCCTGGAA CTCACTCTGT AGACCGGGCT GGCCTCGAAC TCAGAAATCT GCCTGCCTCT
  GCCTCCCGAG TGCTGGGATA AAAGGTGTGC GCCACCAACG CCCGGCTACC TCATTATTTT
  TTAATGTATA AATGAGCTTG AAAGTGTGTG TGGGGTGGTG CAGTGACTCA TTCTCTCCAC
  Y
  AGGGTTCAGT CAGGCCCAGC CTTTTCAGCC CCGTAACTGT AGAGATGCAG GTTAACTTTT
  TTTTTCCCCT TCTAATTACA AAACTACTTT TAATACTTTG AGGTATGTCG CATACCTCAA
  AACTGGGAAG AGTAACCTCA CTTTCCAGGA GTGGCCCAGG GTAAGAGAGG AAGGAAACAC
  GAGAGGGACC TGCTGCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50948633	NES14143199	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	T	T	T		C	T	C	C		T
ss147738306	ENSMUSSNP2436324	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323532330	CHEV_10_127650022	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36707019					SNP	C	C	C	C	T	C	T	T	T	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948633	NES14143199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	912 bp distal
Cpgi2388	CpG island 2388	113 bp proximal
Rr402345	regulatory region 402345	955 bp downstream
Rr402346	regulatory region 402346	within coordinates
Spryd4	SPRY domain containing 4	1172 bp upstream
Tssr99849	transcription start site region 99849	1191 bp upstream
Tssr99850	transcription start site region 99850	1143 bp upstream