rs36707407 SNP Detail

Summary

• ID
  rs36707407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109710616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCACTT TCCATGCCTC
  TTTCCCGCCA CAACAATGGG TGTTTGTCCC TGTCTAAGGC TTCCACCGAG GGCTGCATGC
  TCAAATGCCC TGTACCCTGG GTGCTTCTCA ATACCATGAG GGCTTGGAGG GGCTAGCATG
  ATACTTAGGG AAGAGCCAGG CCAGTTGGTT ACACGTGCAG TTCCTAGTAT CTGAGGTGAG
  R
  TTGCCCGTGA CGGGTTTCCA TTCTTAATGC TGGTACAGTG CATGGTCACC TCTCTTTATC
  ATTGGCTCTT ACTGTGTGAG CATGGGTGTC AGGGGAGGGA CACACTTTGC TGACCCACTG
  GACACCACTG ATGGTCAGGC ATGTAGCTGA CTCATCCTGA CCCAGAGCCT CACATCTCCT
  GAGGTGGGGG TTGGGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052561	NES14374033	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36707407					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052561	NES14374033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109710616 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	945 bp upstream
Mir369	microRNA 369	686 bp downstream
Mir409	microRNA 409	946 bp downstream
Mir410	microRNA 410	387 bp downstream
Mir412	microRNA 412	814 bp downstream
Mir541	microRNA 541	1684 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	387 bp distal
Mirg	miRNA containing gene	within coordinates
Rr472795	regulatory region 472795	1592 bp proximal
Tssr115184	transcription start site region 115184	393 bp downstream