rs36707549 SNP Detail

Summary

• ID
  rs36707549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91738024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAACCTG CCAGACTCAT
  TTATACCATG GGTGCTTTGC ACTTAAGGCT CCCCACCCCT ACCCCTCACC TGGGACACTT
  CGTCTAGGTC TGTGCAGGCT GACTTCTGTC CTAATTATCA CCCCTTCAGA GAAGCCCTGT
  CTGGGCTGCA GCTCTCCTCA GCCTGGCCAC TCTCTCTGTT CCAGTAGGTG GTGTCTTCAA
  Y
  TGGTCTTTAT GCCTAATATG GGTGCTGGGA ACTGAACCCA GGTTCTCTGG TAGAGCAGCA
  GTTAACAATT AAGGACCAAA CCATCTCTCC AGCCCCCAAA ATGGGCCAGT ACCTTTTGTT
  TATTTTTTTT CATCTTATGT GTATGAATGT TTTGCCTGTA TGTATGTGTG TGTATATATA
  TATATATGCG CACTACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51366813	NES13739577	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36707549					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366813	NES13739577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91738024 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	466 bp downstream
Rr379752	regulatory region 379752	1858 bp downstream
Rr634560	regulatory region 634560	1507 bp proximal
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1980 bp downstream