rs36707980 SNP Detail

Summary

• ID
  rs36707980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73817548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAAGTG CCCACAGTGT
  GCTAAGCACT GAGCATCTCA GCATAAAATA CCATTTATAT GCACTGAGAC ATCACCAATA
  AAGGGAGCTA TAGCTACGGT TTGGAAGACT TAAGGGCTGT ATGTTGCTTT GCTTATTTTA
  AATGTGTCAG AAAACCACAA GCTGTACTTC CCCTCTGGGT CCTCTGTTGG GTACCTCATA
  S
  TAGAACAGAA CCTGCAAAAA AGATGGAACT TTTGTGCACA CAGGGATGTC CAGTCACATC
  AACAAAAGCA CAACTCCTAT CAGTGTGGAG CTCTATACTA TACTCCAGGC CTATCTTTTG
  AAAATCCAGG ATACAGTTTG AGGAAAGGGT CTATATTAGA AAAAAATATT TATTTATTTA
  TTTATTTTGG TTTTTTTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51965899	NES14985100	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36707980					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51965899	NES14985100	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73817548 () rs orientation: forward

Symbol	Name	Function Class
B930093H17Rik	RIKEN cDNA B930093H17 gene	within coordinates
Large1	LARGE xylosyl- and glucuronyltransferase 1	within coordinates