rs36709087 SNP Detail

Summary

• ID
  rs36709087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15337775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCCAGTT TACGTTAAAG
  CTACAATTTC ATTGTAAGTT TTGGCACGAT GGGGTCAGGG GAGTAGATAG AATCCATTGA
  GTCTTGTAAA GATGTCAGCC TGAACGTCAC CTTTAAGAGT CTGAGGTATA AAAAGTTTCC
  TGTGCTTCAT GATTTCCTCC TCCTCCAAGA CCAGGCCAGG ATTCTACAGG AAATACATTT
  Y
  TCTCCATTAT GGAACTTGCT GCTTTAATTA GCCACTGTGT CAAAGCTAGA AGTAAGTAGG
  AGTTATTGTC CATTGTTCTG CTTCCCTGTT CGTCACTAAA TTTACATTTA CCAACTCCTA
  ATCAAAGGTG ATTTCAACAT CTGCTTTTCC TACTATTAGT TTCGTAAGTG TAGTATGAAC
  ATCTCGCTTT TAGGTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50645682	NES13624018	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	C	C		T	T	T	T		T
ss146081738	ENSMUSSNP234671	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss325722966	CHEV_19_15434901	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36709087					SNP	C	C	T	T	T	C	T	T	T	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50645682	NES13624018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15337775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10647	CpG island 10647	1938 bp proximal
Pomc-ps1	pro-opiomelanocortin, pseudogene 1	1924 bp upstream