rs36711163 SNP Detail

Summary

• ID
  rs36711163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGGCGGC AAGGAGGCTG AGGGAAGAGC TCCAATGCTG
  CGGCGGGCCC CTGCCTCCTA GGCCGCCCTG TCCCCGCCGG CGCACAAGCG GCTCCAGGCA
  R
  TGTCGCCTAC TCCCGGCGGC TGGAGGAAGG GCCGCGCGCA GGAAGAGCGA GCAGAGGCCG
  CGCGGTGCGG GAGGACAGGA AGCAGGAGGC GGGCGTGAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368060	NES14475965	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36711163					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368060	NES14475965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	1407 bp upstream
Gm70877	predicted gene, 70877	128 bp upstream
Rr396286	regulatory region 396286	786 bp upstream
Rr396287	regulatory region 396287	1097 bp upstream
Rr418128	regulatory region 418128	1363 bp distal
Rr418129	regulatory region 418129	within coordinates
Rr418130	regulatory region 418130	247 bp distal
Rr418131	regulatory region 418131	139 bp proximal
Rr418132	regulatory region 418132	841 bp proximal
Rr418133	regulatory region 418133	1638 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1217 bp downstream
Tssr8628	transcription start site region 8628	1043 bp downstream
Tssr8629	transcription start site region 8629	1362 bp upstream
Tssr8630	transcription start site region 8630	1405 bp upstream
Tssr8631	transcription start site region 8631	1484 bp upstream
Tssr8632	transcription start site region 8632	1865 bp upstream
Tssr13589	transcription start site region 13589	1334 bp upstream
Tssr13590	transcription start site region 13590	1264 bp upstream
Tssr13591	transcription start site region 13591	1237 bp upstream
Tssr13592	transcription start site region 13592	1145 bp upstream
Tssr13593	transcription start site region 13593	1068 bp upstream
Tssr13594	transcription start site region 13594	958 bp upstream
Tssr13595	transcription start site region 13595	911 bp upstream
Tssr13596	transcription start site region 13596	878 bp upstream
Tssr13597	transcription start site region 13597	649 bp upstream
Tssr13598	transcription start site region 13598	within coordinates
Tssr13599	transcription start site region 13599	60 bp downstream
Tssr13600	transcription start site region 13600	229 bp downstream
Tssr13601	transcription start site region 13601	770 bp downstream
Tssr13602	transcription start site region 13602	806 bp downstream
Tssr13603	transcription start site region 13603	1027 bp downstream