rs3671130 SNP Detail

Summary

• ID
  rs3671130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31219977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATCTAA TGTAACGACC
  TTGTGTTTTA TTTACAGTTC AAATTTCCTT CTATTTATTT ATTTATTTAT TTATTTATTT
  TAAATGTTTA GAGAGCTAAC GTAAGTAAAA AAGGAATTTA GGAGTCAGAT GGGTTCTTAC
  TCATGCGTCT TGGGACTTGG TTTAGGTAGT TCTTTGTCTC TAGTCTTTAC TCCCCATCTC
  Y
  GTCCAATATA TAGTATAGTA GGCAAGGTTC CGTCTAGACA GTGGCCCCTT TGCTAGACAT
  ATATAACACT TATCCCAAGC AGTTCTGGAG AAAAGGGCCC TATGTGCCCT GCATAGCAAT
  AGCAGCTCCT GAACATAGAA CAGCCAGAAG GCAGGCCAGG AGCCAGAGTG ACATCTCTAT
  ATTTAGTAAG GGATCCGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5047098	WI_WGS_14_26597125	WI	MOUSE	f	SNP	C						T
ss51508745	NES14639846	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		C	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3671130					SNP	C	T	T	T	C	T	T	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51508745	NES14639846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31219977 () rs orientation: forward

Symbol	Name	Function Class
Eaf1	ELL associated factor 1	within coordinates
Rr389426	regulatory region 389426	1436 bp upstream
Tssr124946	transcription start site region 124946	1597 bp downstream