rs36711593 SNP Detail

Summary

• ID
  rs36711593
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92425342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATAGTA ACTAATTAGA
  TTCTTTTCCT CTGGAAACTA AGGCGAGGAG CAAACATTTC TACCTTGGAA TTCCAATTCA
  GAGGGTAACA CTTGGCACAA GTCCAGTTGG ACCCTGTAAC CATCGGTTTT TGTCTTTCTC
  ATGGCGCAAT AGGTGAAACT TAAGGACTCA GAAGCACCTG GTTCTGTGGA ACAGTGCTCG
  M
  TTTGTTGGCT GCAGTCACAG GGAAATCTGA ACCTGTATGA GTATTCTGAT TTTGAAGTAA
  CTTTTATCTC ATATCAAAGG TATTTCTTTC AGCATAGTAC TAGAAAAATC ACACAGATAA
  ATGAGAATAG AGACAGAATA TAAGACTTTA CTCTGAAAAC GGTCTTTGTT AAAACACCAA
  AAGCTTTTAT TGATAAGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52036442	NES15053665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	A	C		C
ss323074164	CHEV_9_92438127	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36711593					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036442	NES15053665	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92425342 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	420 bp upstream
Cpgi22147	CpG island 22147	312 bp distal
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Rr684632	regulatory region 684632	1015 bp distal
Rr684633	regulatory region 684633	350 bp distal
Rr684634	regulatory region 684634	223 bp distal
Tssr86520	transcription start site region 86520	1017 bp downstream
Tssr86521	transcription start site region 86521	850 bp downstream