rs36712871 SNP Detail

Summary

• ID
  rs36712871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTCGTA GGCACCGGTC
  AGCTTCTCGG TCCTCGAAAT GCTTCCGTGA TCTTCTGGGC TCCACAGCCC AGAGGGTCAT
  CAGTGCTTAA AAGCGACACT TAACGCAAGG GTTCTCTCTT GGAGCAGGTC ATTTTGAGGA
  TGAAATGGGA GCGGAAATAC ATTGGCAGTA CTTATAGTCA GGGGTGAGGA GTACAAGGCA
  R
  GATTCTGTTG TGTGTGTGGG ATAGCGGGCG TGTTCAGTTT GATAAGCGAG CCCTGAAGGG
  AAAGGTGGTA TATGAAGTGA TTTACATCTG TAAATATCTG AACCTTGGCG TGTTTATGAA
  TAAAGGCGAT TCCAGTTAGT AAATTTACAG AGGCTATCGT GTTTATCATT TGGAGACTAA
  TTCTGTAGTG TTTTGTATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51771848	NES14721826	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	G	A
ss148870848	ENSMUSSNP6530003	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36712871					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771848	NES14721826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	56 bp distal
Gm72185	predicted gene, 72185	399 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	215 bp downstream
Rr614892	regulatory region 614892	1556 bp distal
Rr614893	regulatory region 614893	964 bp distal
Rr614894	regulatory region 614894	426 bp distal
Rr614895	regulatory region 614895	313 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	979 bp downstream
Tssr47396	transcription start site region 47396	704 bp downstream
Tssr47397	transcription start site region 47397	306 bp downstream
Tssr51962	transcription start site region 51962	441 bp upstream