rs3671304 SNP Detail

Summary

• ID
  rs3671304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69661949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CCATCCATTT TCTGTCTGAC
  R
  CCCAACATTT CTGTGCTTAA GAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5047272	WI_WGS_13_66582610	WI	MOUSE	f	SNP					G	A
ss39137689	mCV25146558	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss52650324	NES15460511	PERLEGEN	MM_PANEL2	f	SNP	G			G	G		G		G		A	G	G	A		G
ss144563418	ENSMUSSNP6312927	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss324404664	CHEV_13_69652708	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3671304					SNP	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52650324	NES15460511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69661949 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	170 bp upstream
Rr277031	regulatory region 277031	1052 bp proximal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates