rs36714049 SNP Detail

Summary

• ID
  rs36714049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113366829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAGGTCTA TAGGCTCCCC AGATATCTTT TCCTTTTTCT
  TTCTTTCTTT CTTTCTTTCT TTTTTTTTTT TTTTTTTTAA ACAAGCATTA GCTGGCTGTC
  Y
  CCAGGCAGGA CCCTGGGGAA AATTACTATA TTTTACCTAG GGTCTCCTCC AGAGCCCTAA
  GTCTGCTTGG TGCCTGATGG GGAAGAGCAG ATCACTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50460403	NES14119732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	T	C	C		T	C	T		C
ss322424337	CHEV_7_120911106	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36714049					SNP	C	C	C	C	T	T	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460403	NES14119732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113366829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	569 bp distal
Rr653859	regulatory region 653859	1408 bp distal
Rr653860	regulatory region 653860	97 bp proximal
Rr653861	regulatory region 653861	1060 bp proximal
Rr653862	regulatory region 653862	1683 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	1797 bp downstream
Tssr68626	transcription start site region 68626	1745 bp downstream
Tssr68627	transcription start site region 68627	1681 bp downstream
Tssr68628	transcription start site region 68628	1553 bp downstream
Tssr68629	transcription start site region 68629	1529 bp downstream
Tssr68630	transcription start site region 68630	1494 bp downstream
Tssr68631	transcription start site region 68631	1393 bp downstream
Tssr68632	transcription start site region 68632	1337 bp downstream