rs36717299 SNP Detail

Summary

• ID
  rs36717299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG ACTCTCAGGA GGCTCAAAAT
  Y
  AGTGCACAAC ACTCCTACCC TAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50627348	NES13609083	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	T	C	C		T	C	C	C		C
ss146100430	ENSMUSSNP1891672	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss325726635	CHEV_19_17200923	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36717299					SNP	T	T	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627348	NES13609083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103797 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	763 bp downstream
Tssr158489	transcription start site region 158489	954 bp upstream
Tssr158490	transcription start site region 158490	891 bp upstream
Tssr158491	transcription start site region 158491	835 bp upstream