rs36717876 SNP Detail

Summary

• ID
  rs36717876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51108576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAC TTAGAAGGCT CTGGCAGGAA
  R
  ATCAAAGAGT TAACTCTACT CATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51512132	NES14632189	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	G	A	A	A		G	A	A	A		A
ss139469952	ENSMUSSNP2506141	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss324619662	CHEV_14_51490794	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36717876					SNP	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51512132	NES14632189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51108576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	631 bp distal
Gm26782	predicted gene, 26782	within coordinates
Rr404075	regulatory region 404075	304 bp downstream
Rr491714	regulatory region 491714	746 bp distal
Rr491715	regulatory region 491715	570 bp distal
Rr491716	regulatory region 491716	69 bp distal
Rr491717	regulatory region 491717	362 bp proximal
Tep1	telomerase associated protein 1	559 bp upstream
Tssr125373	transcription start site region 125373	712 bp downstream
Tssr128379	transcription start site region 128379	1764 bp upstream
Tssr128380	transcription start site region 128380	569 bp upstream
Tssr128381	transcription start site region 128381	548 bp upstream