rs36718663 SNP Detail

Summary

• ID
  rs36718663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75414672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGTCTT CTCAGCCCTG
  TGTGTCTTGC CTCCCTCTAA CAGAGACCAG CAGCCACCTG GGGTGGCTGG GGGTGTGGGG
  GGTGTGGTGG GGGGAAATAT GGGGGGGGAG TTTTTTGGCT TAGTTCTTGC CAAGTTCTCT
  GCATTTATCA TCCCCCACCC CAAAACCTGA GTTACTTTTC CCCATCTTTA AAGCCAAGCC
  R
  TGTTTTGATA CCTGTCAGTT GGACTATTTT AGGAAGGCTA TTTACTCTCA TTTGGTCAAC
  TTTAAGATGT TTTCGGGAAA GAGCGTATTG ATCATTTAGA CTGTGCTGCT AGTAATTCTA
  ATGGAGGTGG TTTAATTTTA GCTTCTGTGG TTGTTTTTCC TTTTTTTTTT AAATCTTCCT
  TAGAGTCAGT TGGTGGATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533188	NES14628261	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36718663					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533188	NES14628261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75414672 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	778 bp upstream
Rr404213	regulatory region 404213	250 bp downstream
Rr495436	regulatory region 495436	1827 bp distal
Tssr126623	transcription start site region 126623	627 bp downstream
Tssr126624	transcription start site region 126624	589 bp downstream
Tssr126625	transcription start site region 126625	435 bp downstream
Tssr126626	transcription start site region 126626	410 bp downstream
Tssr126627	transcription start site region 126627	328 bp downstream
Tssr126628	transcription start site region 126628	78 bp downstream
Tssr126629	transcription start site region 126629	577 bp upstream
Tssr126630	transcription start site region 126630	616 bp upstream
Tssr129769	transcription start site region 129769	629 bp upstream
Tssr129770	transcription start site region 129770	550 bp upstream
Tssr129771	transcription start site region 129771	1169 bp downstream