TGGTGGCCAG AGGAACACAG GTACTCCCTG GTCCCTGGAG AGTTCTGGGA CATCTTATTC TTTAATCTTT GTTTCTGCAC GTTGCAGGGC TCAGAACTCA GAAGAACATC AAAGACGCAA TTGTTTGCTT TTAATTCTGG GGATCTCTGA CACCTAAACC CGCCTACCAA ACTCAACCTT GGGGAGCAAA GGCCAGCACA M CCAGAAATTC TCTGGAACAG AGCCCGGCAG CTTGGGACCA GTGGAACGGT GTGGCTGTGA GGCGTGCCTT GAGCGTTGCC CCGCCCCAGA GGCGTGTCTT TAGCATAGCC CCGCCCCTTC CATATTGCCT TGGCTCGGGC AGTCAGTGCA CCAGTGCTGG GGCAAGCTGA GGCTTTGGTG CGGGGCTGGA GGCTGCTGCA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | AKR/J |
CAST/EiJ |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51603605 | NES14666071 | PERLEGEN | MM_PANEL2 | f | SNP | A | C | A | A | A | A | A |
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | AKR/J |
CAST/EiJ |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36719437 | SNP | A | C | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51603605 | NES14666071 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr3:118355676 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13752 | CpG island 13752 | 5 bp proximal | ||||||
Dpyd | dihydropyrimidine dehydrogenase | 102 bp upstream | ||||||
Rr583905 | regulatory region 583905 | within coordinates | ||||||
Rr583906 | regulatory region 583906 | 164 bp proximal | ||||||
Tssr31414 | transcription start site region 31414 | 118 bp upstream | ||||||
Tssr31415 | transcription start site region 31415 | 135 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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