rs36719597 SNP Detail

Summary

• ID
  rs36719597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127586089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGATTAG TTATCTGCCT
  TCTCCACTCT CCAACCAACC AGCAGACTTG CCAGTGAATG GTAGGCCTGT GCTCCTATGC
  AGGAGTAAGG GTGATCAGCT TTTGCAGCAA GCCAATGCTT TGGTTCACAT CCTCTTATGA
  GGCAGTGCAG GCAGCCACAC TTCCCTCCTT AACAGTGGTG TGGGGTCCAG GTTCACAGCT
  Y
  GCTGGCTATA GCACATGCAT CTGAGCCCCC TCCTTCTCTT AACTTCTATA GTTTGCAAAG
  TATAACTGTG AACCCTGGAA GGGAGGCAGT TTGTGGAGTG CTAAGAGACA GTGCCTTGGG
  GTCTGGACCC TGGCCTTGGC ACCTTGTTTT GGAGCGGAAC CCACTCTTTA CATTCTACCT
  AGCTCCATCT CTCTCACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618281	NES14659888	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36719597					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618281	NES14659888	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127586089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13801	CpG island 13801	1491 bp distal
Gm65225	predicted gene, 65225	within coordinates
Rr398007	regulatory region 398007	1097 bp upstream
Rr584863	regulatory region 584863	1626 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31605	transcription start site region 31605	1801 bp downstream
Tssr31606	transcription start site region 31606	1615 bp downstream
Tssr31607	transcription start site region 31607	1391 bp downstream
Tssr31608	transcription start site region 31608	1295 bp downstream
Tssr31609	transcription start site region 31609	1256 bp downstream
Tssr31610	transcription start site region 31610	1163 bp downstream
Tssr31611	transcription start site region 31611	1050 bp downstream