rs36719826 SNP Detail

Summary

• ID
  rs36719826
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTTTCC AGGCACGCAG
  CCAGGTGGCA GTGAAGAGCT ACAAGGGTCT TCCGTGCTCA TAAAAATGAC TGCCTCTAGC
  TTAAAGATTC AGAGTAAATT TCCACCTATA AAAAGAAGCT GCGACGAGAT TCTTGTGTAC
  GAAACCAAGG GCAAAATACT GAGGGTGGAA AGGGAAAGTA TTCGCCTCAA AAGTAAACTT
  K
  TTAATAGTAC ATAAAATAGG AATGGGTTTA GCCCTTACCC CACCCACTCC TAACTCTTAG
  GAGTGTCCAG TATTCAGAGC AAGGTCAAGG AGGTGCAGTA ACAACTCCAC CAAACAGTGG
  ACTCAGGATA ATGGGCTTGG CTTGTCAGCC CTGGTATCAA GCAGAAAAAG GGTAAGCAGA
  GTTATAAAAC CCTTGGATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50674821	NES14008200	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36719826					SNP	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674821	NES14008200	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	636 bp distal
Gm48081	predicted gene, 48081	74 bp downstream
Rr676656	regulatory region 676656	820 bp distal
Rr676657	regulatory region 676657	715 bp distal
Rr676658	regulatory region 676658	496 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	166 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	810 bp upstream
Tssr88821	transcription start site region 88821	859 bp upstream
Tssr88822	transcription start site region 88822	831 bp upstream
Tssr88823	transcription start site region 88823	804 bp upstream
Tssr88824	transcription start site region 88824	781 bp upstream
Tssr88825	transcription start site region 88825	762 bp upstream
Tssr88826	transcription start site region 88826	670 bp upstream
Tssr88827	transcription start site region 88827	588 bp upstream
Tssr88828	transcription start site region 88828	558 bp upstream
Tssr88829	transcription start site region 88829	540 bp upstream
Tssr88830	transcription start site region 88830	512 bp upstream
Tssr88831	transcription start site region 88831	479 bp upstream