rs36721080 SNP Detail

Summary

• ID
  rs36721080
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71225941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAAATT TATAAGCTAC
  AAAACAGCAG GACAATACTT ATTTTTTTCA TTTAAAATAT TCCAATTCCC AAACTGTGAT
  AAAATATTTC TTCTCTGATG CATTTAGTCT GTGATATTTT GTTATGGTAA CCTTAGCAAC
  CTCATGCGAT TGGTTACTAT GTGGTAGTGT CTGACCTCCA AGCCTGAATT TCTGCTATAA
  S
  ATTACTGAGT TTAAAAAAAT CACATGGTAA AATAGCGACA ACACCTCTGG TTATGATACT
  AAGCAAACCC TAAAAATATA CTGTCATCTT CAAAAGTTAA ATACTGTATT ACCAACCATT
  GTTGCCATTT AGATCAGTTC AGAAACATCT CCTGGGTCTT CCTGTAAAGT CTGTACTGAG
  AGTCAGGAAG TCCAATCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50470084	NES13703541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36721080					SNP	G	G	G	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50470084	NES13703541	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71225941 () rs orientation: forward

Symbol	Name	Function Class
Rr393876	regulatory region 393876	840 bp upstream