rs36721234 SNP Detail

Summary

• ID
  rs36721234
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:80365713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGGTCA AAATGGCTTA
  GGCTGGCGGC TCCAAGGGCC TCGGGTGAGG TGCCCGGTTT TCTGCTCTAA GCGTTTAGCC
  ACCCCTAAGA AAACGCTAGG AGGGGAGGCC CTGAGTGGGG TGCGGACAGG TGCGTCCTCT
  GGAACTACAC AAAGGGCCGG CGGCACCGCC ACTGAGCCCC TAGCAACTGC ACGCAAGCTG
  M
  GCTCGCGCGC TTTCCGCCGC CCCACGGCGC TCAGGGCGGG AGGCTCGCCG GGAGGGCGGG
  GCAGCGCGCG CAGGTCAGCG GCGTAAGCGA CAGACACCCT CGGGCCTGCT CGCGGACGCG
  GCCTGGGAAG CGCGAAGGCA GTTCTAGGTT CGGCACCGCT AGCATTGTAG GGATTTGTAG
  TCCGCGAGCC CGTGGGGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51968117	NES14983072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36721234					SNP	C	C	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51968117	NES14983072	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80365713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	within coordinates
Gm51579	predicted gene, 51579	mRNA-UTR
Otud4	OTU domain containing 4	592 bp upstream
Rr400987	regulatory region 400987	98 bp upstream
Rr665883	regulatory region 665883	44 bp proximal
Tssr78137	transcription start site region 78137	267 bp upstream
Tssr78138	transcription start site region 78138	315 bp upstream
Tssr78139	transcription start site region 78139	342 bp upstream
Tssr78140	transcription start site region 78140	408 bp upstream
Tssr78141	transcription start site region 78141	558 bp upstream
Tssr78142	transcription start site region 78142	679 bp upstream
Tssr78143	transcription start site region 78143	1092 bp upstream
Tssr78144	transcription start site region 78144	1111 bp upstream
Tssr78145	transcription start site region 78145	1139 bp upstream
Tssr81884	transcription start site region 81884	367 bp upstream