rs36721523 SNP Detail

Summary

• ID
  rs36721523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:125118528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTGCTT TATCTCTCTC
  TGACAACCCT AGCGCTCAGA AGCACTGATG TGCAAATACC ACGGGGCCCT GGCAGGTGCT
  GCCCACTACC TGCACAGGAG GCTCTGGGCT GCCGATGAAG GGGTGTCGAC AGTGGGCAGG
  CCATGCTTTA GCCAGGGAAA GGCTAGCCCG GGCAGCTCAG GTCAGTCCTG CTGTTGTTCT
  R
  AGACAGTGGA CTGCACTGCA CCCTCAGGGA ACCCAAAGAT CACATGGGAC CTGATTCACA
  CAGGAGAAGC TGGCTACGTG TATGTTTGCA CGCGCGCGCG CGCATACACA CACACACACA
  CACACACACA CTCATACCAC ACCCCAACAC TAGATTGCCT CTGGTTTCTC AAGAAGCCCC
  CCAGCTGGAG GCGCTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51198405	NES13820258	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36721523					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51198405	NES13820258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125118528 () rs orientation: forward

Symbol	Name	Function Class
Ncor2	nuclear receptor co-repressor 2	within coordinates
Tssr53394	transcription start site region 53394	1330 bp downstream
Tssr53395	transcription start site region 53395	1359 bp downstream
Tssr53396	transcription start site region 53396	1577 bp downstream