rs36721934 SNP Detail

Summary

• ID
  rs36721934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131671926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCAGGAAC ACCTCTCTGC TGCCCGCTGC
  CCAGACACAC CTGCAGCCCT GCCCAGCCGG CTCTGCTCAC CCAGAGGTAA GCCCCACCCA
  GCCCAACCCA CCCAAGGGCT GGGGGTTATC CAGGGAAGAG AGCAGGCCCC AGGGGTACCT
  Y
  CAGAAGAGAG ATGACGTGGT GGGGGCTTAG GAACCTGAGT ACACATGGGA AGGACGTTCT
  GAACCGGATC CTATGAGCAG CCCTCCAGTC CTTGTGGAGC GCACCATAAA GACCTCAGCT
  GCTAGGGTGA GTTTCACTGG AAGAATACAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51365836	NES14471120	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	T	T	C	T	T		C	T	T	C		C
ss145481802	ENSMUSSNP2737985	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						C
ss319975138	CHEV_1_133640765	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36721934					SNP	C	T	C	T	T	T	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365836	NES14471120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131671926 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	159 bp downstream
Tssr8661	transcription start site region 8661	within coordinates