rs36722159 SNP Detail

Summary

• ID
  rs36722159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:60743828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGCATC ATGACTTGTG
  GAGCAGTCAC ACTTCAGGGA GGGCTTGCTG TCCGCTAGGG ACTCTGACAG GACCGTGCTT
  CACCCTCACG GCAGCCCTGA GGCTGCCGGT GACCTCACCT CTACCTCAGA AAAGACCCAT
  CTTGCAGAGG TGCTGCGTCT TGGAAAAGTC ACATGACCAG TTGGAAACCG AGCTGTGGAC
  Y
  ACACTCAGGG TGACCCTCCC AATGTTTTTG TTTCATGACA TCCAGGGTCT GGGTCTTCAG
  TCGCCCACAT AGCCTGGCCC CAAGGGCAGG GCTACATATG CTTCACACCT TCACTCCTCT
  CTGCCCACAC CCTCAGTGAC AATGACAGCT GTCACTGACT GCTGAGCTCC AGATGCTGCG
  AACAAAGGCT CAAGGCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50418262	NES13463267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36722159					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418262	NES13463267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60743828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr538593	regulatory region 538593			662 bp distal
Rr538594	regulatory region 538594			415 bp distal
Synpo	synaptopodin			Intron
				Noncoding-Transcript-Variant
Tssr153456	transcription start site region 153456			688 bp upstream
Tssr153457	transcription start site region 153457			644 bp upstream