rs36722320 SNP Detail

Summary

• ID
  rs36722320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGGCCA GGTAAACAAA
  AAATATAAAT GCTATCATAA AACAAAGTCT GCGCAAAAGC CATTGACTCT GCTGAAAGTC
  AATTAACTCC ATGCATGAGA AATTCTTATT AATGTTTTTG GCCTAGGAAT AAAGTAAATA
  TACTACAAAG AGGCTAATCA GCAAGATTCT TCATCTGGTA GGTGGTCAGT TCAGTGCCAC
  R
  TGGTTAGCAT GTCCTTTCAC TGACATGTTC ACTTAGAAAA TAAAAGGAAC ATAATTTCTA
  CTGGAGAGAA GCTTATGTTC ATTATTAAAC ACAGATAACT CCACTAGTAA CTGCAGTCAT
  GATGGAAAAA ATGTATTGGT GCCCACATGA GCTTTCTAGA CATAACTTAT TGATGAGTAG
  TTTACCTCTG CCTGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51174928	NES13825886	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36722320					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174928	NES13825886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csn2	casein beta			Intron
				Noncoding-Transcript-Variant
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12			1864 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16			1824 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1			1667 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2			1979 bp distal
Tssr1529	transcription start site region 1529			1281 bp downstream
Tssr46883	transcription start site region 46883			1331 bp downstream
Tssr46884	transcription start site region 46884			1316 bp downstream
Tssr46885	transcription start site region 46885			1295 bp downstream
Tssr46886	transcription start site region 46886			1265 bp downstream
Tssr46887	transcription start site region 46887			1248 bp downstream
Tssr46888	transcription start site region 46888			1142 bp downstream
Tssr46889	transcription start site region 46889			1123 bp downstream
Tssr46890	transcription start site region 46890			1090 bp downstream
Tssr46891	transcription start site region 46891			1077 bp downstream
Tssr46892	transcription start site region 46892			1048 bp downstream
Tssr46893	transcription start site region 46893			1022 bp downstream
Tssr46894	transcription start site region 46894			977 bp downstream
Tssr46895	transcription start site region 46895			957 bp downstream
Tssr46896	transcription start site region 46896			878 bp downstream
Tssr51618	transcription start site region 51618			1302 bp upstream
Tssr51619	transcription start site region 51619			1268 bp upstream
Tssr51620	transcription start site region 51620			1258 bp upstream
Tssr51621	transcription start site region 51621			1239 bp upstream
Tssr51622	transcription start site region 51622			1203 bp upstream
Tssr51623	transcription start site region 51623			1187 bp upstream
Tssr51624	transcription start site region 51624			1170 bp upstream
Tssr51625	transcription start site region 51625			1160 bp upstream
Tssr51626	transcription start site region 51626			1148 bp upstream
Tssr51627	transcription start site region 51627			1122 bp upstream
Tssr51628	transcription start site region 51628			1012 bp upstream
Tssr51629	transcription start site region 51629			918 bp upstream
Tssr51630	transcription start site region 51630			870 bp upstream
Tssr51631	transcription start site region 51631			831 bp upstream
Tssr51632	transcription start site region 51632			572 bp upstream
Tssr51633	transcription start site region 51633			211 bp downstream
Tssr51634	transcription start site region 51634			333 bp downstream
Tssr51635	transcription start site region 51635			1297 bp downstream
Tssr51636	transcription start site region 51636			1323 bp downstream
Tssr51637	transcription start site region 51637			1436 bp downstream